PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021208m
Common NameCISIN_1g021208mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 317aa    MW: 35277.3 Da    PI: 8.2341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021208mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12145192355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  orange1.1g021208m 145 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 192
                        5699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.777142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-17146205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16146204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-13147196No hitNo description
SMARTSM003533.6E-14148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEISSIKGLP ELGMEDLSFM NQWHMMNSID EFNLLPIAAA FGENLQHSYT HPSFNNNTGI  60
DRPQKQLKTS TWNSSETGFN PNNVSSINMN QMGILKPKQE TGAGYPSDIL PSQVSFGNNQ  120
NYVFKASQGA KRISPGAGNR LSNTQDHIIA ERKRREKLSQ RFIALSAIVP GLKKMDKASV  180
LGDAIKYLKQ LQEKVKILEE QANKKTIESV VFVNKTQLSD EGDNPNGAFN EALPEIEARF  240
CDKSVLIRVH CEKRKGVFEK IVAEIEKLHL TVINSSVMTF GSSVLDVTII AQMDVEFNMT  300
VKDLVKNLHS AFQLFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155ERKRRE
2151156RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486799.10.0PREDICTED: transcription factor bHLH25-like
RefseqXP_015388301.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A067FXL50.0A0A067FXL5_CITSI; Uncharacterized protein
STRINGPOPTR_0001s29400.11e-141(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-67bHLH family protein